PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 385aa    MW: 43460.4 Da    PI: 7.1612
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05220239120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_009116471.1 220 FSCPVCFKTFNRYNNMQMHM 239
                     89*****************9 PP

2zf-C2H215.16.7e-05304326123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  + + ++H +++
  XP_009116471.1 304 FMCRKCGKVFAVRGDWRTHEKNC 326
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38220242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-6220239IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64220247IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
SuperFamilySSF576672.83E-6286324No hitNo description
Gene3DG3DSA:3.30.160.606.4E-5291324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537304324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTDPYSNFFT GWFKSNPFHH YPNSSTSPSP PPPHSSFFFP HSGDLHRPPP APTPPPSPPL  60
REALPLLSLS PANKQQPHHT IKFKNHLHHH DHQIQEPPSI SMDVDYDHHH HQDDHNLDDH  120
DHDVTVALHI GLPSPSPQDM ASLLMMSSSS SSSRPTTHYL EDMNGKKDLD NDYHQGGVGG  180
GEDDDEDSVG GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW  240
GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG  300
IKPFMCRKCG KVFAVRGDWR THEKNCGKLW YCICGSDFKP KRSLKDHIKA FGNGHGAYGI  360
DGFDEEDEPA SEVEQLDNDH ESISK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544470.0AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBankBT0210890.0BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116471.10.0PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 1
SwissprotQ9SVY10.0ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM4CT040.0M4CT04_BRARP; Uncharacterized protein
STRINGBra007346.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-164C2H2 family protein